Perform the below steps to get the process details causing the deletion operation from event logging.

Steps to Enable Event Logs for Identifying the Process Causing Product Deletion

These steps will enable auditing for file operations deletion.

Wait for the Issue to Recur and once the issue happens perform the below steps(If required, restart the machine if the deletion happens after a reboot).

Process Name will provide the complete path of the process that has caused the deletion operation of installer files.

 Installer files